ashipde

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I am facing the exact issue (Seurat 5.0.3) ``` > ce An object of class Seurat 13336 features across 50032 samples within 1 assay Active assay: RNA (13336 features, 0...

It seems that for clustering, SAUCIE uses batch-corrected data (asinh values) if SAUCIE was also directed to do batch-correction. Raw data will be used if batch-correction is not specified. Thus,...