asedova

So I believe the previous version used was 3.1.0, and the current one in 3.2. I am trying on the Summit computer, IBM AC922, it has 42 Power9 CPUs per...

Ok, I'm trying to get you a stack trace. The GDB seems to be installed incompletely and all I'm getting right now is: Program received signal SIGINT, Interrupt. 0x00002000006378b8 in...

Yes, in order to actually run on the compute nodes even in an interactive job on Summit you have to use jsrun. For instance, even hostname returns a different thing...

Here's the trace from running on the batch node: #0 v_movemask (x=...) at /ccs/home/adaa/HHSuite/hhsuite-3.2-debug/hh-suite/src/simd.h:460 #1 Prefilter::swStripedByte(unsigned char*, int, unsigned char*, int, unsigned short, unsigned short, int __vector(4)*, int __vector(4)*, int...

Actually I left out this part: Program received signal SIGINT, Interrupt. v_movemask (x=...) at /ccs/home/adaa/HHSuite/hhsuite-3.2-debug/hh-suite/src/simd.h:460 460 result |= (t.as_char[0] & 0x80) >> 7; Missing separate debuginfos, use: debuginfo-install glibc-2.17-260.el7_6.6.ppc64le Let...

Yes, always seems to start with #0 v_movemask (x=...)

I have not had it finish yet but I have only waited for about 1.5 hours. There's a 2 hour limit for small jobs on Summit.

That's why I was wondering if there was a small test to run... like on a tiny database.

ok will do

Looks like there's a good chance it's an infinite loop. With scop40 I let it run for almost 2 hours and no progress. With the single sequence db generated following...