wgd

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Is the singularity installation up to date?

3

Hi, I installed the singularity container on a server, and the function --version, and dmd doesn't work. ALso when I try to run mcl analysis, it constantly complains cds file...

smallfishcui

Hang up due to codeml and fix

1

Hello, I am using wgd to examine ancient genome duplication in my focal group. I ran wgd pre on two focal species to filter cds to those that would be...

mason-linscott

wgd syn: multiplicons.txt file issue

1

Hi, Thanks very much for this tool! I've run in to an issue running `wgd syn`. I've pasted the traceback below. This appears to be caused by the following code...

chrisjackson-pellicle

Dev

2

Hi Arthur, I am going through the `wgd` code as a way to learn a bit more of python. It is fun actually :-) I have made some changes to...

lizhencmb

*ks.svg figure is empty

6

hi, I run the WGD using format.SoyC09.CDS.fasta and ormat.SoyC09.gff as my input file,here is my code: wgd mcl -n 8 --cds --mcl -s format.SoyC09.CDS.fasta -o SoyC09.CDS.out wgd ksd --n_threads 8...

shiyi-pan

compute a Ks distribution error

2

Hello, I am running the code in the example file during the test software installation.when I run the code :wgd ksd sample.mcl sample.fasta,an error happened.  I hope you can...

bigboom1

result figures are empty

6

hi, I run the WGD like that,format.SoyC09.CDS.fasta and ormat.SoyC09.gff are my input file : ``` wgd mcl -n 8 --cds --mcl -s format.SoyC09.CDS.fasta -o SoyC09.CDS.out wgd ksd --n_threads 8 --pairwise...

shiyi-pan

Dotplots.svg and ks_anchors.tsv files are empty

9

Hi, I have used supplementary material to run WGD. I am able to rum till wgd syn without any issue but in the wgd_syn results only dotplot as well as...

muthu1722

Bumps [joblib](https://github.com/joblib/joblib) from 0.11 to 1.2.0. Changelog Sourced from joblib's changelog. Release 1.2.0 Fix a security issue where eval(pre_dispatch) could potentially run arbitrary code. Now only basic numerics are supported....

dependabot[bot]

Hi, @arzwa Can the input sequence file of WGD use protein sequence directly or Pacbio full-length transcriptome sequence? Thank you！

Tang-pro