aryeelab
problem with python script
I am running hichipper for the first time and I run into this error:
Traceback (most recent call last):
File "/users/mbeato/rferrari/.local/bin/hichipper", line 11, in
what is this about?
Thanks a lot in advance.
R
Hi,
The tool was originally written with only python 2 support— that to me seems like the first thing to change (looks like you’re using python 3)
On Mar 18, 2021, at 2:20 PM, robeach78 @.@.>> wrote:
I am running hichipper for the first time and I run into this error:
Traceback (most recent call last): File "/users/mbeato/rferrari/.local/bin/hichipper", line 11, in load_entry_point('hichipper==0.7.9', 'console_scripts', 'hichipper')() File "/software/as/el7.2/EasyBuild/CRG/software/Python/3.8.2-GCCcore-9.3.0/lib/python3.8/site-packages/pkg_resources/init.py", line 489, in load_entry_point return get_distribution(dist).load_entry_point(group, name) File "/software/as/el7.2/EasyBuild/CRG/software/Python/3.8.2-GCCcore-9.3.0/lib/python3.8/site-packages/pkg_resources/init.py", line 2852, in load_entry_point return ep.load() File "/software/as/el7.2/EasyBuild/CRG/software/Python/3.8.2-GCCcore-9.3.0/lib/python3.8/site-packages/pkg_resources/init.py", line 2443, in load return self.resolve() File "/software/as/el7.2/EasyBuild/CRG/software/Python/3.8.2-GCCcore-9.3.0/lib/python3.8/site-packages/pkg_resources/init.py", line 2449, in resolve module = import(self.module_name, fromlist=['name'], level=0) File "/users/mbeato/rferrari/.local/lib/python3.8/site-packages/hichipper-0.7.9-py3.8.egg/hichipper/cli.py", line 136 if make_ucsc or make_washu: ^ TabError: inconsistent use of tabs and spaces in indentation
what is this about?
Thanks a lot in advance.
R
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://github.com/aryeelab/hichipper/issues/90, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AD32FYP6DKK2IC3PF52AZ6DTEJVDLANCNFSM4ZNNJNSA.
HI, I also got the same issue. I tried install to a python2 version but the MACS2 package will failed installation. While I installed it successfully under python3, then this error happen. What should I do to solve this?
Thanks, Yanchun
I also have the same issue. Did anyone know how to install MACS2 under python3(such as Python 2.7)? After installing MACS2, pip install hichipper can be solved. In my case, I installed the MACS2.1.4 version(suitable for Python 2.7) and double check Cython version is 0.27.2. Then, with python2.7 setup.py again, you will successfully install hichipper package.
