arviz
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Published
20 hours ago •
arviz-devs
arviz-devs
Pyjags and latest numpy
Describe the bug CI crashes with latest numpy for pyjags
https://dev.azure.com/ArviZ/ArviZ/_build/results?buildId=5398&view=logs&j=7f538728-4589-5563-0e87-d0823eb40420&t=bc0ad562-2d38-5af9-a6a9-06323c6c7eeb
@michaelnowotny
2022-01-03T20:09:03.6277524Z ##[section]Starting: pytest
2022-01-03T20:09:03.6283298Z ==============================================================================
2022-01-03T20:09:03.6283814Z Task : Command line
2022-01-03T20:09:03.6284220Z Description : Run a command line script using Bash on Linux and macOS and cmd.exe on Windows
2022-01-03T20:09:03.6284620Z Version : 2.182.0
2022-01-03T20:09:03.6284942Z Author : Microsoft Corporation
2022-01-03T20:09:03.6285328Z Help : https://docs.microsoft.com/azure/devops/pipelines/tasks/utility/command-line
2022-01-03T20:09:03.6285748Z ==============================================================================
2022-01-03T20:09:03.7481042Z Generating script.
2022-01-03T20:09:03.7488721Z Script contents:
2022-01-03T20:09:03.7489518Z python -m pytest arviz/tests/external_tests --cov arviz --cov-report=xml
2022-01-03T20:09:03.7490168Z ========================== Starting Command Output ===========================
2022-01-03T20:09:03.7509907Z [command]/usr/bin/bash --noprofile --norc /home/vsts/work/_temp/011aa490-6951-414e-95fa-7d4daef89f58.sh
2022-01-03T20:09:09.9737520Z ============================= test session starts ==============================
2022-01-03T20:09:09.9739529Z platform linux -- Python 3.9.9, pytest-6.2.5, py-1.11.0, pluggy-1.0.0
2022-01-03T20:09:09.9740432Z rootdir: /home/vsts/work/1/s, configfile: pytest.ini
2022-01-03T20:09:09.9741396Z plugins: azurepipelines-0.8.0, cov-3.0.0
2022-01-03T20:09:09.9742339Z collected 126 items
2022-01-03T20:09:09.9742850Z
2022-01-03T20:09:10.7217610Z arviz/tests/external_tests/test_data_cmdstan.py ........... [ 11/126]
2022-01-03T20:09:11.1200491Z arviz/tests/external_tests/test_data_cmdstanpy.py ... [ 14/126]
2022-01-03T20:09:11.4834260Z arviz/tests/external_tests/test_data_emcee.py ................... [ 33/126]
2022-01-03T20:10:11.6008772Z arviz/tests/external_tests/test_data_numpyro.py ................. [ 50/126]
2022-01-03T20:10:11.6129449Z arviz/tests/external_tests/test_data_pyjags.py .Fatal Python error: Aborted
2022-01-03T20:10:11.6131038Z
2022-01-03T20:10:11.6132046Z Thread 0x00007fda90fec700 (most recent call first):
2022-01-03T20:10:11.6132806Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/threading.py", line 316 in wait
2022-01-03T20:10:11.6133352Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/threading.py", line 574 in wait
2022-01-03T20:10:11.6134739Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/tqdm/_monitor.py", line 60 in run
2022-01-03T20:10:11.6171108Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/threading.py", line 973 in _bootstrap_inner
2022-01-03T20:10:11.6172272Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/threading.py", line 930 in _bootstrap
2022-01-03T20:10:11.6173063Z
2022-01-03T20:10:11.6173871Z Current thread 0x00007fdb40d46740 (most recent call first):
2022-01-03T20:10:11.6174656Z File "<frozen importlib._bootstrap>", line 228 in _call_with_frames_removed
2022-01-03T20:10:11.6175246Z File "<frozen importlib._bootstrap_external>", line 1173 in create_module
2022-01-03T20:10:11.6175794Z File "<frozen importlib._bootstrap>", line 565 in module_from_spec
2022-01-03T20:10:11.6176321Z File "<frozen importlib._bootstrap>", line 666 in _load_unlocked
2022-01-03T20:10:11.6176855Z File "<frozen importlib._bootstrap>", line 986 in _find_and_load_unlocked
2022-01-03T20:10:11.6177389Z File "<frozen importlib._bootstrap>", line 1007 in _find_and_load
2022-01-03T20:10:11.6178691Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pyjags/model.py", line 21 in <module>
2022-01-03T20:10:11.6179345Z File "<frozen importlib._bootstrap>", line 228 in _call_with_frames_removed
2022-01-03T20:10:11.6193155Z File "<frozen importlib._bootstrap_external>", line 850 in exec_module
2022-01-03T20:10:11.6193833Z File "<frozen importlib._bootstrap>", line 680 in _load_unlocked
2022-01-03T20:10:11.6194372Z File "<frozen importlib._bootstrap>", line 986 in _find_and_load_unlocked
2022-01-03T20:10:11.6195115Z File "<frozen importlib._bootstrap>", line 1007 in _find_and_load
2022-01-03T20:10:11.6196102Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pyjags/incremental_sampling.py", line 21 in <module>
2022-01-03T20:10:11.6196754Z File "<frozen importlib._bootstrap>", line 228 in _call_with_frames_removed
2022-01-03T20:10:11.6197296Z File "<frozen importlib._bootstrap_external>", line 850 in exec_module
2022-01-03T20:10:11.6197828Z File "<frozen importlib._bootstrap>", line 680 in _load_unlocked
2022-01-03T20:10:11.6198396Z File "<frozen importlib._bootstrap>", line 986 in _find_and_load_unlocked
2022-01-03T20:10:11.6198921Z File "<frozen importlib._bootstrap>", line 1007 in _find_and_load
2022-01-03T20:10:11.6199735Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pyjags/__init__.py", line 13 in <module>
2022-01-03T20:10:11.6200369Z File "<frozen importlib._bootstrap>", line 228 in _call_with_frames_removed
2022-01-03T20:10:11.6200915Z File "<frozen importlib._bootstrap_external>", line 850 in exec_module
2022-01-03T20:10:11.6201446Z File "<frozen importlib._bootstrap>", line 680 in _load_unlocked
2022-01-03T20:10:11.6201974Z File "<frozen importlib._bootstrap>", line 986 in _find_and_load_unlocked
2022-01-03T20:10:11.6202503Z File "<frozen importlib._bootstrap>", line 1007 in _find_and_load
2022-01-03T20:10:11.6203028Z File "/home/vsts/work/1/s/arviz/data/io_pyjags.py", line 55 in __init__
2022-01-03T20:10:11.6203582Z File "/home/vsts/work/1/s/arviz/data/io_pyjags.py", line 366 in from_pyjags
2022-01-03T20:10:11.6204217Z File "/home/vsts/work/1/s/arviz/tests/external_tests/test_data_pyjags.py", line 63 in test_extract_samples_dictionary_from_arviz_inference_data
2022-01-03T20:10:11.6205205Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/python.py", line 183 in pytest_pyfunc_call
2022-01-03T20:10:11.6206369Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_callers.py", line 39 in _multicall
2022-01-03T20:10:11.6207326Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_manager.py", line 80 in _hookexec
2022-01-03T20:10:11.6208224Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_hooks.py", line 265 in __call__
2022-01-03T20:10:11.6209117Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/python.py", line 1641 in runtest
2022-01-03T20:10:11.6210041Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/runner.py", line 162 in pytest_runtest_call
2022-01-03T20:10:11.6210957Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_callers.py", line 39 in _multicall
2022-01-03T20:10:11.6211862Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_manager.py", line 80 in _hookexec
2022-01-03T20:10:11.6212784Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_hooks.py", line 265 in __call__
2022-01-03T20:10:11.6213683Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/runner.py", line 255 in <lambda>
2022-01-03T20:10:11.6214583Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/runner.py", line 311 in from_call
2022-01-03T20:10:11.6215496Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/runner.py", line 254 in call_runtest_hook
2022-01-03T20:10:11.6216587Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/runner.py", line 215 in call_and_report
2022-01-03T20:10:11.6217506Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/runner.py", line 126 in runtestprotocol
2022-01-03T20:10:11.6218448Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/runner.py", line 109 in pytest_runtest_protocol
2022-01-03T20:10:11.6219362Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_callers.py", line 39 in _multicall
2022-01-03T20:10:11.6220378Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_manager.py", line 80 in _hookexec
2022-01-03T20:10:11.6221277Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_hooks.py", line 265 in __call__
2022-01-03T20:10:11.6222188Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/main.py", line 348 in pytest_runtestloop
2022-01-03T20:10:11.6223103Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_callers.py", line 39 in _multicall
2022-01-03T20:10:11.6224005Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_manager.py", line 80 in _hookexec
2022-01-03T20:10:11.6224906Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_hooks.py", line 265 in __call__
2022-01-03T20:10:11.6225797Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/main.py", line 323 in _main
2022-01-03T20:10:11.6226696Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/main.py", line 269 in wrap_session
2022-01-03T20:10:11.6227662Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/main.py", line 316 in pytest_cmdline_main
2022-01-03T20:10:11.6228620Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_callers.py", line 39 in _multicall
2022-01-03T20:10:11.6229525Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_manager.py", line 80 in _hookexec
2022-01-03T20:10:11.6230415Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pluggy/_hooks.py", line 265 in __call__
2022-01-03T20:10:11.6231322Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/config/__init__.py", line 162 in main
2022-01-03T20:10:11.6232256Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/_pytest/config/__init__.py", line 185 in console_main
2022-01-03T20:10:11.6233178Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/pytest/__main__.py", line 5 in <module>
2022-01-03T20:10:11.6233809Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/runpy.py", line 87 in _run_code
2022-01-03T20:10:11.6234416Z File "/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/runpy.py", line 197 in _run_module_as_main
2022-01-03T20:10:36.6161128Z /home/vsts/work/_temp/011aa490-6951-414e-95fa-7d4daef89f58.sh: line 1: 5008 Aborted (core dumped) python -m pytest arviz/tests/external_tests --cov arviz --cov-report=xml
2022-01-03T20:10:36.6164182Z ##[error]Bash exited with code '134'.
2022-01-03T20:10:36.6187649Z ##[section]Finishing: pytest
