rgi icon indicating copy to clipboard operation
rgi copied to clipboard

Published 20 hours ago • verified publisher icon arpcard

How to determine relative abundances for RGI bwt for metagenomics?

Open mhmism opened this issue 3 years ago • 2 comments

Hello,

I there a way to calculate relative abundances of the RGI bwt results for downstream samples comparison?

mhmism avatar Apr 16 '21 10:04 mhmism

Also wondering about this. Were you able to find anything to accomplish this? And if so, are you willing to share your solution?

lroppolo avatar Aug 16 '21 16:08 lroppolo

I have the same question. I am wondering whether "All Mapped Reads" from the allele/gene mapping tables could be used to estimate the abundance if normalizing by reference length and the total number of reads.

VGalata avatar Jan 12 '22 11:01 VGalata