amr_curation
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arpcard
A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curation issues.
hi sir： other resistance tools record Staphylococcus aureus dfrB Mutation resistant to Trimethoprim；but card do not； infomation as below: #Gene_ID Gene_name Codon_pos Ref_nuc Ref_codon Res_codon Resistance PMID Mechanism Notes Required_mut...
there are any variants?variants?
Background. AAN85115.1 currently carries the designation dfrA3b which suggests a close relationship to dfrA3. It's actually quite different, and NCBI has been asked to change the name of dfrA3b in...
Based on PMID:31169899, NCBI has named proteins similar to WP_048029797.1 as "Ecr family regulatory small membrane protein". However, during review of related proteins we determined that the typical length for...
Dear ARPCARD curation team, I went through the diversity of **_bla_CARB** genes and their corresponding proteins (data freely available here: https://tinyurl.com/CARB-21032024) and noticed some discrepancies: - First, the CARD **blaCARB-2...
Dear ARPCARD curator team, This novel gene is absent from ARPCARD (from NDARO as well): Protein RefSeq:WP_010154754.1 Nucleotide entry: CP123906 Now published as PMID38497972 Good luck, Thomas
Dear ARPCARD amr_curation team, I went through the diversity of blaVIM genes and corresponding b-lactamases VIM proteins and noticed some recently reported blaVIM alleles were absent, namely blaVIM-74 to blaVIM-86....
Dear ARPCARD amr_curation team, I went through the diversity of blaGES genes and corresponding b-lactamases GES proteins and noticed some discrepancies I'd like to point out: - The ARPCARD reference...
In the Lahey repository, the allele number was assigned to a partial sequence for [OXA-410](https://www.ncbi.nlm.nih.gov/protein/AJD77428) (last residue missing). Now a [complete sequence](https://www.ncbi.nlm.nih.gov/protein/HCT5551642.1) is available, which should replace the old one.
[OXA-116](https://card.mcmaster.ca/ontology/37841) is a partial gene in CARD but listed at [NCBI's Reference Gene Catalog](https://www.ncbi.nlm.nih.gov/pathogens/refgene/#oxa-116). @danielhhaft do you have additional data on this gene or perhaps partials are not supported in...
