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Published 20 hours ago • verified publisher icon arives

Updated rr2

Open arives opened this issue 4 years ago • 2 comments

Daijiang,

While checking the update in RStudio, devtools::check() gave errors that all seemed to occur because I changed the text within some of the stop() calls. The errors occurred because the new text didn't match the old text. I couldn't figure out how to find the library of old text that check() was using, so I figured I'd leave it for you. I hope you don't mind.

Cheers, Tony

arives avatar Jun 13 '20 13:06 arives

To do once phyr is updated on CRAN with new function name styles (from . to _).

  • [x] change pglmm.compare to pglmm_compare
  • [x] change pglmm.predicted.values to pglmm_predicted_values
  • [x] add R2.pred method for communityPGLMM objects

The phylolm::phyloglm() on CRAN (v2.6) does not have alphaWarn returned as part of the results. It does have it returned on the Github version 2.6.2. So I replaced it with convergence. So

  • [x] update R2_lik with alphaWarn once phylolm is updated on CRAN

daijiang avatar Jun 14 '20 17:06 daijiang

@arives Tony, it seems that all examples from R2_lik, R2_pred, and R2_resid are similar enough from R2. We may can remove them to reduce check time on CRAN. Just a thought.

daijiang avatar Jun 14 '20 19:06 daijiang