Anders Riutta

I made additional proof of concept changes in my [proposals](https://github.com/ariutta/jupyterWith/blob/proposals/default.nix) branch, now supporting serverextensions, magics and lab extensions. You try it out with my [demo](https://github.com/ariutta/jupyterWith-demo) repo.

> suffers from the same indeterminism problems that our current branch has, right? Yes, that is correct. My branch is just an incremental change that does the following: * sets...

I came up with a proof of concept for using the JupyterLab 3 prebuilt extensions from PyPi as well as prebuilding a JupyterLab extension for Nix. [Here](https://github.com/wikipathways/pfocr2ndex/tree/main/xpm2nix) is where I...

Would you be able to use any ideas from [Warp](https://github.com/dgiagio/warp)? It "creates self-contained single binary applications ... and is supported on Linux, Windows and macOS". Edit: Warp doesn't appear to...

Here's a really rough version of something that works for me on macOS Sierra: https://github.com/ariutta/nix-bundle-macos It created this bundle (warning >200MB): https://www.dropbox.com/s/n5gy0938qels30g/PathVisio-Installer.dmg?dl=0

I'm open to moving it anywhere people would find it useful. I'm just removing it from the bridgedbjs code, because it's too complex for JavaScript.

How about adding it as a new column to the TSV file [organisms.txt](https://github.com/bridgedb/BridgeDb/blob/master/org.bridgedb.bio/resources/org/bridgedb/bio/organisms.txt)?

[datasources.txt](https://github.com/bridgedb/BridgeDb/blob/master/org.bridgedb.bio/resources/org/bridgedb/bio/datasources.txt) specifies primary and secondary datasources. Here are [the headers]( https://cdn.rawgit.com/ariutta/1c2c8179467e16823383bbcdb1fcd108/raw/9cb860d90bab61de8d6ae45a926df53ee1525956/pretty-tsv-viewer.html?source=https%3A%2F%2Frawgit.com%2Fbridgedb%2FBridgeDb%2Fmaster%2Forg.bridgedb.bio%2Fresources%2Forg%2Fbridgedb%2Fbio%2Fdatasources_headers.txt) for that file.

Good point -- it would be a big improvement to make this [FAIR](http://www.nature.com/articles/sdata201618) compliant! The current full result for [this query](http://webservice.bridgedb.org/Human/properties): ``` DATASOURCEVERSION 2.0 DATATYPE GeneProduct SERIES Homo sapiens genes...

> we need a small datasources.txt for use of BridgeDb on WikiPathways (or used to) For the WikiPathways frontend, `bridgedbjs` currently depends on `datasources.txt`, but that code could be easily...