spateo-release
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missing dict in morphofield_gp
when run morphofield_gp
, I found there is no norm_dict
and kernel_dict
in morpho_class.py
File ~/miniconda3/envs/spateo/lib/python3.9/site-packages/spateo/tdr/morphometrics/morphofield/gaussian_process.py:102, in _gp_velocity(X, vf_dict)
100 def _gp_velocity(X: np.ndarray, vf_dict: dict) -> np.ndarray:
101 # pre_scale = vf_dict["pre_norm_scale"]
--> 102 norm_x = (X - vf_dict["norm_dict"]["mean_transformed"]) / vf_dict["norm_dict"]["scale_transformed"]
103 if vf_dict["kernel_dict"]["dist"] == "cdist":
104 quary_kernel = _con_K(norm_x, vf_dict["inducing_variables"], vf_dict["beta"])
KeyError: 'norm_dict'
File ~/miniconda3/envs/spateo_updated/lib/python3.9/site-packages/spateo/tdr/morphometrics/morphofield/gaussian_process.py:103, in _gp_velocity(X, vf_dict)
100 def _gp_velocity(X: np.ndarray, vf_dict: dict) -> np.ndarray:
101 # pre_scale = vf_dict["pre_norm_scale"]
102 norm_x = (X - vf_dict["norm_dict"]["mean_transformed"]) / vf_dict["norm_dict"]["scale_transformed"]
--> 103 if vf_dict["kernel_dict"]["dist"] == "cdist":
104 quary_kernel = _con_K(norm_x, vf_dict["inducing_variables"], vf_dict["beta"])
105 elif vf_dict["kernel_dict"]["dist"] == "geodist":
KeyError: 'kernel_dict'