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not enough memory to run construct_surface

Open caiquanyou opened this issue 7 months ago • 2 comments

my data contain 580000 cells and I run the construct_surface function and kernal die, any solutions to solve this mem issue . embryo_mesh, , = st.tdr.construct_surface(pc=embryo_pc, key_added="tissue", alpha=0.6, cs_method="marching_cube", cs_args={"mc_scale_factor": 0.8}, smooth=1000, scale_factor=1.08)

caiquanyou avatar Jul 10 '24 02:07 caiquanyou