dynamo-tutorials
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aristoteleo
Tutorials on using latest dynamo package
Hello, I have experimented with the zebrafish.ipynb file and it seems that the results generated are different from what is presented in the tutorial, for example, the vector field topology....
When changing `neuron_labeling.obs['time'] = neuron_labeling.obs.time.astype("categorical")` (cell 8) to `neuron_labeling.obs['time'] = neuron_labeling.obs.time.astype(float)` to circumvent the problem in #4, I get a `ValueError: Residuals are not finite in the initial point.` while...
The [scNT_seq_readthedocs.ipynb](https://github.com/aristoteleo/dynamo-tutorials/blob/master/scNT_seq_readthedocs.ipynb) notebook fails while executing `dynamo_workflow(neuron_labeling)` (cell 10) with `TypeError: Categorical is not ordered for operation max you can use .as_ordered() to change the Categorical to an ordered one`....
# Conventional scRNA-seq - [x] notebooks/zebrafish - [x] notebooks/zebrafish_topography_analysis_tutorial # Differential geometry - [x] notebooks/tutorial_hsc_dynamo_megakaryocytes_appearance - [x] notebooks/tutorial_hsc_dynamo_cellwise_analysis - [x] notebooks/tutorial_hsc_dynamo_basophil_lineage - [x] notebooks/Differential_geometry # Labeling scRNA-seq - [x] notebooks/scNT_seq_readthedocs...
