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dynamo downloads wrong datasets for scNT_seq

Open rorymaizels opened this issue 3 years ago • 1 comments

Hi, very quick issue:

I have dynamo version 1.1.0, and if I run either dyn.sample_data.scNT_seq_neuron_labeling() or dyn.sample_data.scNT_seq_neuron_splicing() it seems to download the zebrafish dataset instead.

Maybe the files have been accidentally updated to be the wrong dataset?

rorymaizels avatar Aug 22 '22 10:08 rorymaizels

Thanks @rorymaizels for reporting this bug!

My latest commit should fix the bug.

For the neural activity data, you will need to use the activity genes for the velocity analyses. I have added the adata.var['activity_genes'] info. Or you find the gene list here: https://www.dropbox.com/s/h2rtmj3et098xba/0408_grp_info.txt?dl=0

let me know if you have any additional questions!

Xiaojieqiu avatar Aug 22 '22 15:08 Xiaojieqiu

This issue is stale because it has been open 90 days with no activity. Remove stale label or comment or this will be closed in 14 days

github-actions[bot] avatar Nov 21 '22 01:11 github-actions[bot]