Zebulun Arendsee

Missing connections

1

Binding a nested Rmonad into a funnel loses the nested nodes: ``` R 1 %>>% { . %>>% { . + 2 }} %>>% funnel(44) %>% size #R> 4 ```...

In ``` R 4 %>_% { . %>>% sqrt } ``` There should be a `transitive` edge between `4` and `.`, but there isn't. Contrast the plot of the above...

Newick files with comma-delimited labels load incorrectly

3

For the tree ``` (('A','B')[&label=1,!color=#73ffff],'C');` ``` I would expect a 3-tip tree with the (A,B) subtree containing the label 1 and color #73ffff. But the comma in the label seems...

In the flu case study of commit d6c2aba3d3e, in the function definition: ``` plotCladeTree :: FluConfig -> RootedTree Str e (a, Clade) -> () plotCladeTree config = plotTree config@treefile ....

In the flu case study of commit d6c2aba3d3e, in the function definition: ``` plotCladeTree :: FluConfig -> RootedTree Str e (a, Clade) -> () plotCladeTree config = plotTree config@treefile ....

Using svglite v2.1.1, given the following code: ```R require(ggplot2) require(svglite) p

Just a few minor corrections.

I would like to cite this specification in a paper. Do you have any suggestions? Could you add the repo to Zenodo to get a citable object?

Jupyter notebook Python2/Python3 clash

1

The SimplePendulum Jupyter notebook is specified as a Python3 program, but one of its dependencies, the benchmark/diffeq.py file, appears to be written in Python2. The first code block does not...

import error in pypge.search

4

The import below ``` from pypge.search import PGE ``` outputs the following error message ``` ** (pge-test.py:5235): WARNING **: Couldn't register with accessibility bus: Did not receive a reply. Possible...