Archana Madhav comments

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                                            Archana Madhav

OSError: [Errno 22] Invalid argument

Hello, I'm facing the same issue. Any advice would be appreciated!

Trouble visualising kraken2 output

Hi @fbreitwieser and @gregorysprenger! Thank you for your responses! :) Here is my Kraken2 command: `while read file; do kraken2 --db /rds/project/rds-Jz6YwN89pIk/kraken2_db/kraken2_new/custom_plusPF --paired kneaddata_output/${file%%.*}_1_kneaddata_paired_1.fastq.gz kneaddata_output/${file%%.*}_1_kneaddata_paired_2.fastq.gz --threads 50 --gzip-compressed --use-names --report...

Bracken input error: "biom.exception.TableException: Cannot delimit self if I don't have data..."

Hello, did you manage to figure out why this error occurred? I am facing the same issue with phylum-level classification. Very odd, since I successfully ran it on species level...