araikes

 Models fit were `dipy_fit_dki .... --save_metrics "fa" --fit_method 'OLS'` for `raw_FA` and `patch2self_FA`. `sub-control01_FA` was the fully preprocessed image fit with DKI and WLS. `sub-control01_model-dkiRESTORE_FA` was fit using a...

@ShreyasFadnavis Yes I will. I'll try and get it done tomorrow. Thanks

@nichy-consortium, If that's your whole call, you forgot `-proc_structural`, so it's trying to run `-proc_surf` without the `-proc_structural` outputs T1.

So, oddly, I'm able to run the same call on the same data on a different system and have it complete without issue.

I think it's a couple of things (mostly the combination of 3-5): 1. Different CPUs (AWS: `AMD EPYC 7R32 with 16 cores` vs HPC: `AMD EPYC 7642 48-core processor x2`)...

Yeah, I can test it

It made it past `synthseg` on AWS using the unstable tag. However, it appears that it still attempting to allocate 8 processors to `synthseg` (even if it only ended up...

Yeah, I threw 8 in just to challenge things. On our AWS server, anatomical+diffusion processing worked without issue on the unstable tag.

Question: What happens to the QC CSV from SynthSeg? It's getting written but I don't see it as a file anywhere in my outputs.

Ok, so per @oesteban, GSR may be a suitable metric. I looked at the GSR code from the functional IQMs and it definitely looks like it would be applicable. I...