About the evaluation in CASP14

[YiningWang2]

Hello everyone. I am doing some evaluation jobs of the inference pipeline. I am wondering how to evaluate the result pdb file such like TM-score, for those proteins that CASP14 doesn't provide the remarking pdb file.

[gahdritz]

If you use one of the sets of "_ptm" model weights, the model will output a predicted TM score in addition to the predicted structure, if that's what you're asking.

[starkhu]

i used "finetuning_ptm_2.pt" as openfold_checkpoint_path, running the inference command, but i only got pdb file and alignments dir, TM score was not seen in the log also. could anyone can provide a fasta file and its ground truth. and Using this fasta file as input, we run the inference program then can get a TM score.