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test_data_pipeline.py is not working

Open Ericzhang1 opened this issue 6 months ago • 3 comments

When I try to run the following command under test folder:

python test_data_pipeline.py

I have met the following issues:

====================================================================== ERROR: test_fasta_compare (main.TestDataPipeline)

Traceback (most recent call last): File "test_data_pipeline.py", line 56, in test_fasta_compare template_featurizer = TemplateHitFeaturizer( TypeError: Can't instantiate abstract class TemplateHitFeaturizer with abstract methods get_templates


Ran 1 test in 0.017s

I am wondering what went wrong ?

Ericzhang1 avatar Jan 02 '24 21:01 Ericzhang1

Which branch are you using? Asking because this is an abstract method in the multimer branch but not in main.

christinaflo avatar Jan 03 '24 15:01 christinaflo

Yes, I am using multimer branch.

Ericzhang1 avatar Jan 03 '24 22:01 Ericzhang1

What commit are you using? The latest version does not use TemplateHitFeaturizer in the test.

christinaflo avatar Jan 09 '24 19:01 christinaflo