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Published 20 hours ago • verified publisher icon aqlaboratory

Issue in prep_mmseqs_dbs.sh

Open phdiassantos opened this issue 3 years ago • 1 comments

Hi, Iam running the script prep_mmseqs_dbs.sh. Ive done the corrections in script changing tar2exprofiledb to tsv2exprofiledb.

but the script extract the files and return the following error:

uniclust30_2018_08/uniclust30_2018_08_a3m.ffdata uniclust30_2018_08/uniclust30_2018_08_a3m.ffindex uniclust30_2018_08/uniclust30_2018_08_hhm.ffdata uniclust30_2018_08/uniclust30_2018_08_hhm.ffindex uniclust30_2018_08/uniclust30_2018_08_cs219.ffdata uniclust30_2018_08/uniclust30_2018_08_cs219.ffindex uniclust30_2018_08/uniclust30_2018_08.cs219 uniclust30_2018_08/uniclust30_2018_08.cs219.sizes uniclust30_2018_08/uniclust30_2018_08_a3m_db uniclust30_2018_08/uniclust30_2018_08_a3m_db.index uniclust30_2018_08/uniclust30_2018_08_hhm_db uniclust30_2018_08/uniclust30_2018_08_hhm_db.index uniclust30_2018_08/uniclust30_2018_08_md5sum ../../scripts/prep_mmseqs_dbs.sh: line 33: mmseqs: command not found

I got mmseqs installed.

Could anyone help me?

phdiassantos avatar Nov 30 '21 18:11 phdiassantos

Is mmseqs on your PATH? E.g. can you run mmseqs --help outside of the shell script?

gahdritz avatar Nov 30 '21 19:11 gahdritz