openfold
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ModuleNotFoundError: No module named 'attn_core_inplace_cuda'
No module named attn_core_inplace_cuda
was found during inference on A100. Preinstalled CUDA 11.6 outside of conda.
Traceback (most recent call last):
File "run_pretrained_openfold.py", line 21, in <module>
from openfold.utils.script_utils import load_models_from_command_line, parse_fasta, run_model, prep_output, \
File "/scratch/user/openfold/openfold/utils/script_utils.py", line 10, in <module>
from openfold.model.model import AlphaFold
File "/scratch/user/openfold/openfold/model/model.py", line 21, in <module>
from openfold.model.embedders import (
File "/scratch/user/openfold/openfold/model/embedders.py", line 20, in <module>
from openfold.model.primitives import Linear, LayerNorm
File "/scratch/user/openfold/openfold/model/primitives.py", line 37, in <module>
from openfold.utils.kernel.attention_core import attention_core
File "/scratch/user/openfold/openfold/utils/kernel/attention_core.py", line 20, in <module>
attn_core_inplace_cuda = importlib.import_module("attn_core_inplace_cuda")
File "/scratch/user/openfold/lib/conda/envs/openfold_venv/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
ModuleNotFoundError: No module named 'attn_core_inplace_cuda'
lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 20.04 LTS
Release: 20.04
Codename: focal