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error in python3 setup.py install:"TypeError: expected string or bytes-like object"

Open liweiqing1997 opened this issue 2 years ago • 2 comments

can you help me ! I ran it according to the instructions, I don't know why I get an error

(openfold_venv) [lwq@alphafold2-1 openfold-main]$ python3 setup.py install

No CUDA runtime is found, using CUDA_HOME='/usr/local/cuda-11.2/' running install /data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. setuptools.SetuptoolsDeprecationWarning, /data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/setuptools/command/easy_install.py:159: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. EasyInstallDeprecationWarning, running bdist_egg running egg_info writing openfold.egg-info/PKG-INFO writing dependency_links to openfold.egg-info/dependency_links.txt writing top-level names to openfold.egg-info/top_level.txt reading manifest file 'openfold.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'openfold.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py running build_ext Traceback (most recent call last): File "setup.py", line 95, in 'Programming Language :: Python :: 3.7,' File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/setuptools/init.py", line 153, in setup return distutils.core.setup(**attrs) File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/distutils/core.py", line 148, in setup dist.run_commands() File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/setuptools/command/install.py", line 74, in run self.do_egg_install() File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/setuptools/command/install.py", line 116, in do_egg_install self.run_command('bdist_egg') File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/setuptools/command/bdist_egg.py", line 164, in run cmd = self.call_command('install_lib', warn_dir=0) File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/setuptools/command/bdist_egg.py", line 150, in call_command self.run_command(cmdname) File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/setuptools/command/install_lib.py", line 11, in run self.build() File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/distutils/command/install_lib.py", line 107, in build self.run_command('build_ext') File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/setuptools/command/build_ext.py", line 79, in run _build_ext.run(self) File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/distutils/command/build_ext.py", line 340, in run self.build_extensions() File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 434, in build_extensions self._check_cuda_version(compiler_name, compiler_version) File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 808, in _check_cuda_version torch_cuda_version = packaging.version.parse(torch.version.cuda) File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/pkg_resources/_vendor/packaging/version.py", line 49, in parse return Version(version) File "/data/lwq/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/pkg_resources/_vendor/packaging/version.py", line 264, in init match = self._regex.search(version) TypeError: expected string or bytes-like object

liweiqing1997 avatar Oct 05 '22 16:10 liweiqing1997

Getting this error as well!

Abhishaike avatar Feb 03 '23 18:02 Abhishaike

Do you have CUDA installed + GPUs available?

gahdritz avatar Feb 06 '23 17:02 gahdritz