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how to specify db-load-mode in precomputed_alignments_mmseqs.py

Open lzhangUT opened this issue 1 year ago • 1 comments

Hi, I am using the recomputed_alignments_mmseqs.py to search for MSA for my input.fasta which has 9 sequences inside. but the mmseq2 is taking too long to run it, it is already over 4 hours, but still hasn't finished. When I was using colabfold, they do have an argument db_load-mode to specify msa search for a batch. I see you have this parameter in the colabfold_search.py, but I dont know how to specify that in the command of recomputed_alignments_mmseqs.py. Thank you. and how should I maximize the usage of cpus for msa search?

lzhangUT avatar Aug 02 '22 14:08 lzhangUT

I'll do this along with #175 when I revamp the mmseqs script.

gahdritz avatar Aug 02 '22 18:08 gahdritz