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cpu not fully used

Open lzhangUT opened this issue 2 years ago • 2 comments

Hi, I am running precomputed_alginment_mmseqs.py, everything is up running (for now). but when I check the usage of cpus (my Vitural machine has 6 vcpus), it seems like mmseqs is not using the cpu a lot, while it says running mmseqs needs a lot of CPUs. image is there any way i can specify to use multiple cpus while running the precomputed_alignment_mmseqs.py? or is it by default using the all the cpus avaiable?

lzhangUT avatar Jul 27 '22 15:07 lzhangUT

This isn't currently supported, but I should be able to add it fairly easily. I think it would just be a matter of adding a single flag inside colabfold_search.sh. I'll put this on my list.

gahdritz avatar Jul 28 '22 23:07 gahdritz

thank you!

lzhangUT avatar Jul 29 '22 07:07 lzhangUT