Antônio Camargo
Antônio Camargo
It could be useful to allow users to provide a file containing a list of accessions (one per line) as input. Each sample would then be downloaded sequentially.
If the taxdump is downloaded to a directory within `/tmp`, setting `keep_files` to `True` by default would be unnecessary. This adjustment would prevent situations where the `nodes.dmp` and `names.dmp` files...
When using the [`micro`](https://github.com/zyedidia/micro) or [`hx`](https://github.com/helix-editor/helix) editors in Rio, mouse interactions appear to be buggy. Specifically, clicking on a certain part of the document moves the text cursor to a...
This PR adds instructions for installing numbat on Linux, macOS, and Windows using [Pixi](https://pixi.sh/) with the [`pixi global`](https://pixi.sh/latest/global_tools/introduction/) command.
This PR adds instructions to install `llm` with [Pixi](https://pixi.sh/latest/).
This PR adds instruction on how to install `mods` with [Pixi](https://pixi.sh/latest/) (works for Linux, macOS, and Windows).
**Describe the bug** Environment variables specified in the configuration file are not expanded. As a result, it is not possible to specify the path to a style file using variables...
To open up compressed files in `csvlens` the user needs to pipe from a command that decompresses the file and outputs to stdout. It would be useful if `csvlens` could...
### Description I have a PDF figure with a translucent gradient ([`translucent-gradient.pdf`](https://github.com/user-attachments/files/23241793/translucent-gradient.pdf)) that I'm using in a Typst document. The rendered PDF ignores the transparency of the gradient in the...
As we discussed previously, having target and query coverage columns in the output would be very convenient to make filtering by coverage easier. Right now we need to have the...