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Take circularity into account when applying post-classification filters
In response to Issue #23, geNomad's post-classification filters should be refined to take into account the circularity/completeness of input sequences. This could prevent the erroneous exclusion of legitimate plasmids due to the current stringent filtering criteria aimed at genomic island fragments.
Key Points:
- Use circularity data (DTRs or user input) to adjust post-classification filters, making them more lenient for complete, circular sequences.