RNAsamba
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apcamargo
A tool for computing the coding potential of RNA transcript sequences using deep learning classification model
Hi, @apcamargo Hello, the results I ran here only have protein sequences and no cds sequences. Can this software get the corresponding cds sequence codes?
Training
Hello, I am trying to train plant specific model. The coding file includes 7.5Gb and lncrna is 322Mb. They were killed due to memory issue and I wonder that I...
Hi, I'm trying to run "rnasamba classify" and I got the following error: `original_keras_version = f.attrs['keras_version'].decode('utf8')` `AtrributeError: 'str' object has no attribute 'decode'` Could this error be related to the...
Currently, users need to download one of the two model files (or train their own) before executing RNAsamba. Packaging pre-trained models in the library would spare users from downloading external...
Currently, RNAsamba only evaluates the transcript sequences that are given as input. But in some cases the user may not know the true orientation of the transcript, so a `--check_reverse_complement`...