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HBASE-29501 IOException in SerialReplicationChecker.canPush causes entries to be pushed out of order
Detailed Example
Zookeeper state:
- /hbase/replication/regions/e8/bf/b3479752a0512841ed8c47d5c8d0-peer_1
- pushedSeqId=27
- (Main queue) /hbase/replication/rs/home-host-1,16020,1754475014225/peer_1/home-host-1%2C16020%2C1754475014225.1754475020411
- lastWalPosition=409
- (Reclaimed queue) /hbase/replication/rs/home-host-1,16020,1754475014225/peer_1-home-host-1,16020,1754474482197/home-host-1%2C16020%2C1754474482197.1754474488449
- lastWalPosition=716
WAL's:
- (Active WAL) /hbase/replication/rs/home-host-1,16020,1754475014225/peer_1/home-host-1%2C16020%2C1754475014225.1754475020411
position: 409
,{"sequence":"34","region":"e8bfb3479752a0512841ed8c47d5c8d0","actions":[{"qualifier":"HBASE::REGION_EVENT::REGION_OPEN","vlen":216,"row":"\\x00","type":"Put","family":"METAFAMILY","timestamp":"1754475023833","total_size_sum":"328"}],"table":{"name":[116,101,115,116,95,116,97,98,108,101],"nameAsString":"test_table","namespace":[100,101,102,97,117,108,116],"namespaceAsString":"default","qualifier":[116,101,115,116,95,116,97,98,108,101],"qualifierAsString":"test_table","systemTable":false,"hashCode":2070785505}}edit heap size: 368 <--- trying to push this entry
position: 750
,{"sequence":"35","region":"e8bfb3479752a0512841ed8c47d5c8d0","actions":[{"qualifier":"HBASE::COMPACTION","vlen":219,"row":"\\x00","type":"Put","family":"METAFAMILY","timestamp":"1754475024678","total_size_sum":"320"}],"table":{"name":[116,101,115,116,95,116,97,98,108,101],"nameAsString":"test_table","namespace":[100,101,102,97,117,108,116],"namespaceAsString":"default","qualifier":[116,101,115,116,95,116,97,98,108,101],"qualifierAsString":"test_table","systemTable":false,"hashCode":2070785505}}edit heap size: 360
position: 1079
,{"sequence":"36","region":"e8bfb3479752a0512841ed8c47d5c8d0","actions":[{"qualifier":"col1","vlen":4,"row":"key6","type":"Put","family":"cf1","timestamp":"1754475048622","total_size_sum":"88"}],"table":{"name":[116,101,115,116,95,116,97,98,108,101],"nameAsString":"test_table","namespace":[100,101,102,97,117,108,116],"namespaceAsString":"default","qualifier":[116,101,115,116,95,116,97,98,108,101],"qualifierAsString":"test_table","systemTable":false,"hashCode":2070785505}}edit heap size: 128
position: 1185
- (Old WAL from reclaimed queue) /hbase/oldWALs/home-host-1%2C16020%2C1754474482197.1754474488449
position: 409
,{"sequence":"27","region":"e8bfb3479752a0512841ed8c47d5c8d0","actions":[{"qualifier":"HBASE::REGION_EVENT::REGION_OPEN","vlen":182,"row":"\\x00","type":"Put","family":"METAFAMILY","timestamp":"1754474494541","total_size_sum":"296"}],"table":{"name":[116,101,115,116,95,116,97,98,108,101],"nameAsString":"test_table","namespace":[100,101,102,97,117,108,116],"namespaceAsString":"default","qualifier":[116,101,115,116,95,116,97,98,108,101],"qualifierAsString":"test_table","systemTable":false,"hashCode":2070785505}}edit heap size: 336
position: 716
,{"sequence":"28","region":"e8bfb3479752a0512841ed8c47d5c8d0","actions":[{"qualifier":"col1","vlen":4,"row":"key5","type":"Put","family":"cf1","timestamp":"1754474868855","total_size_sum":"88"}],"table":{"name":[116,101,115,116,95,116,97,98,108,101],"nameAsString":"test_table","namespace":[100,101,102,97,117,108,116],"namespaceAsString":"default","qualifier":[116,101,115,116,95,116,97,98,108,101],"qualifierAsString":"test_table","systemTable":false,"hashCode":2070785505}}edit heap size: 128 <--- trying to push this entry
position: 822
,{"sequence":"30","region":"e8bfb3479752a0512841ed8c47d5c8d0","actions":[{"qualifier":"HBASE::FLUSH","vlen":123,"row":"\\x00","type":"Put","family":"METAFAMILY","timestamp":"1754474978323","total_size_sum":"216"}],"table":{"name":[116,101,115,116,95,116,97,98,108,101],"nameAsString":"test_table","namespace":[100,101,102,97,117,108,116],"namespaceAsString":"default","qualifier":[116,101,115,116,95,116,97,98,108,101],"qualifierAsString":"test_table","systemTable":false,"hashCode":2070785505}}edit heap size: 256
position: 1341
,{"sequence":"31","region":"e8bfb3479752a0512841ed8c47d5c8d0","actions":[{"qualifier":"HBASE::FLUSH","vlen":157,"row":"\\x00","type":"Put","family":"METAFAMILY","timestamp":"1754474979228","total_size_sum":"248"}],"table":{"name":[116,101,115,116,95,116,97,98,108,101],"nameAsString":"test_table","namespace":[100,101,102,97,117,108,116],"namespaceAsString":"default","qualifier":[116,101,115,116,95,116,97,98,108,101],"qualifierAsString":"test_table","systemTable":false,"hashCode":2070785505}}edit heap size: 288
position: 1603
,{"sequence":"32","region":"e8bfb3479752a0512841ed8c47d5c8d0","actions":[{"qualifier":"HBASE::REGION_EVENT::REGION_CLOSE","vlen":148,"row":"\\x00","type":"Put","family":"METAFAMILY","timestamp":"1754474979245","total_size_sum":"264"}],"table":{"name":[116,101,115,116,95,116,97,98,108,101],"nameAsString":"test_table","namespace":[100,101,102,97,117,108,116],"namespaceAsString":"default","qualifier":[116,101,115,116,95,116,97,98,108,101],"qualifierAsString":"test_table","systemTable":false,"hashCode":2070785505}}edit heap size: 304
position: 1877
hbase:meta barriers:
[2, 5, 6, 9, 17, 26, 33]
Entry with seqId=34 cannot be pushed until previous range finishes (entries with seqId 27, 28, 30, 31, 32, between barriers 26 and 33):
2025-08-06T11:13:05,286 DEBUG [regionserver/home-host-1:16020.replicationSource,peer_1.replicationSource.wal-reader.home-host-1%2C16020%2C1754475014225,peer_1] regionserver.SerialReplicationChecker: Replication barrier for test_table/e8bfb3479752a0512841ed8c47d5c8d0/34=[#edits: 0 = <>]: ReplicationBarrierResult [barriers=[2, 5, 6, 9, 17, 26, 33], state=OPEN, parentRegionNames=]
2025-08-06T11:13:39,338 DEBUG [regionserver/home-host-1:16020.replicationSource,peer_1.replicationSource.wal-reader.home-host-1%2C16020%2C1754475014225,peer_1] regionserver.SerialReplicationChecker: Previous range for test_table/e8bfb3479752a0512841ed8c47d5c8d0/34=[#edits: 0 = <>] has not been finished yet, give up
However, if main WAL reader thread runs before RS_CLAIM_REPLICATION_QUEUE WAL reader thread, when running canPush with entry seqId=34 and IOException is caught, in SerialReplicationSourceWALReader.readWALEntries we get:
try {
if (!checker.canPush(entry, firstCellInEntryBeforeFiltering)) { // <--- entry test_table/e8bfb3479752a0512841ed8c47d5c8d0/34=[#edits: 0 = <>]
if (batch.getLastWalPosition() > positionBefore) {
// we have something that can push, break
break;
} else {
checker.waitUntilCanPush(entry, firstCellInEntryBeforeFiltering);
}
}
} catch (IOException e) {
LOG.warn("failed to check whether we can push the WAL entries", e); // <--- catch exception here
if (batch.getLastWalPosition() > positionBefore) { // <--- 0 > 409 <=> false
// we have something that can push, break
break;
}
sleepMultiplier = sleep(sleepMultiplier); // <--- sleep for some time
}
// arrive here means we can push the entry, record the last sequence id
batch.setLastSeqId(Bytes.toString(entry.getKey().getEncodedRegionName()),
entry.getKey().getSequenceId()); // <--- lastSeqIds set to 34
// actually remove the entry.
removeEntryFromStream(entryStream, batch);
if (addEntryToBatch(batch, entry)) { // <-- false (entry has 0 edits)
break;
}
// <---continue to process another entry
The next iteration in SerialReplicationSourceWALReader.readWALEntries processes entry with seqId=35:
try {
if (!checker.canPush(entry, firstCellInEntryBeforeFiltering)) { // <--- entry test_table/e8bfb3479752a0512841ed8c47d5c8d0/35=[#edits: 0 = <>]
if (batch.getLastWalPosition() > positionBefore) {
// we have something that can push, break
break;
} else {
checker.waitUntilCanPush(entry, firstCellInEntryBeforeFiltering);
}
}
} catch (IOException e) {
LOG.warn("failed to check whether we can push the WAL entries", e); // <--- catch exception here
if (batch.getLastWalPosition() > positionBefore) { // <--- 750 > 409 <=> true
// we have something that can push, break
break; // <--- break here
}
sleepMultiplier = sleep(sleepMultiplier);
}
The shipper thread logs:
2025-08-06T11:44:34,477 DEBUG [regionserver/home-host-1:16020.replicationSource,peer_1.replicationSource.shipperhome-host-1%2C16020%2C1754475014225,peer_1] regionserver.ReplicationSourceShipper: Shipper from source peer_1 got entry batch from reader: WALEntryBatch [walEntries=[], lastWalPath=hdfs://mycluster/hbase/WALs/home-host-1,16020,1754475014225/home-host-1%2C16020%2C1754475014225.1754475020411, lastWalPosition=750, nbRowKeys=0, nbHFiles=0, heapSize=0, lastSeqIds={e8bfb3479752a0512841ed8c47d5c8d0=34}, endOfFile=false,usedBufferSize=0]
ReplicationSourceShipper.shipEdits ships edit with seqId=34:
private void shipEdits(WALEntryBatch entryBatch) { // <--- entryBatch WALEntryBatch [walEntries=[], lastWalPath=hdfs://mycluster/hbase/WALs/home-host-1,16020,1754475014225/home-host-1%2C16020%2C1754475014225.1754475020411, lastWalPosition=750, nbRowKeys=0, nbHFiles=0, heapSize=0, lastSeqIds={e8bfb3479752a0512841ed8c47d5c8d0=34}, endOfFile=false,usedBufferSize=0]
List<Entry> entries = entryBatch.getWalEntries();
int sleepMultiplier = 0;
if (entries.isEmpty()) { // <--- true
updateLogPosition(entryBatch);
return;
}
updateLogPosition() will call ReplicationSourceManager.logPositionAndCleanOldLogs(), which calls ZKReplicationQueueStorage.setWALPosition().
ZKReplicationQueueStorage.setWALPosition() updates zookeeper with:
- /hbase/replication/regions/e8/bf/b3479752a0512841ed8c47d5c8d0-peer_1
- pushedSeqId=34
- /hbase/replication/rs/home-host-1,16020,1754475014225/peer_1/home-host-1%2C16020%2C1754475014225.1754475020411
- lastWalPosition=750
Afterwards main WAL reader thread can push entries with seqId higher than seqId's in reclaimed queue:
2025-08-06T11:55:11,218 DEBUG [regionserver/home-host-1:16020.replicationSource,peer_1.replicationSource.wal-reader.home-host-1%2C16020%2C1754475014225,peer_1] regionserver.SerialReplicationChecker: Replication barrier for test_table/e8bfb3479752a0512841ed8c47d5c8d0/35=[#edits: 0 = <>]: ReplicationBarrierResult [barriers=[2, 5, 6, 9, 17, 26, 33], state=OPEN, parentRegionNames=]
2025-08-06T11:56:51,300 DEBUG [regionserver/home-host-1:16020.replicationSource,peer_1.replicationSource.wal-reader.home-host-1%2C16020%2C1754475014225,peer_1] regionserver.SerialReplicationChecker: The previous range for test_table/e8bfb3479752a0512841ed8c47d5c8d0/35=[#edits: 0 = <>] has been finished, pass
2025-08-06T11:57:25,313 TRACE [regionserver/home-host-1:16020.replicationSource,peer_1.replicationSource.wal-reader.home-host-1%2C16020%2C1754475014225,peer_1] regionserver.SerialReplicationChecker: The sequence id for test_table/e8bfb3479752a0512841ed8c47d5c8d0/36=[#edits: 1 = <key6/cf1:col1/1754475048622/Put/vlen=4/seqid=0; >] is continuous, pass
This means table in sink cluster can have out of order entries (key6 seqid in source cluster = 36):
hbase:005:0> scan "test_table"
scan "test_table"
ROW COLUMN+CELL
key1 column=cf1:col1, timestamp=2025-08-05T11:45:04.884, value=val1
key2 column=cf1:col1, timestamp=2025-08-06T04:47:52.269, value=val1
key3 column=cf1:col1, timestamp=2025-08-06T04:51:51.826, value=val1
key4 column=cf1:col1, timestamp=2025-08-06T05:08:19.270, value=val1
key6 column=cf1:col1, timestamp=2025-08-06T11:10:48.622, value=val1
5 row(s)
Took 0.1082 seconds
After reclaimed queue finishes (key5 seqid in source cluster = 28):
hbase:006:0> scan "test_table"
scan "test_table"
ROW COLUMN+CELL
key1 column=cf1:col1, timestamp=2025-08-05T11:45:04.884, value=val1
key2 column=cf1:col1, timestamp=2025-08-06T04:47:52.269, value=val1
key3 column=cf1:col1, timestamp=2025-08-06T04:51:51.826, value=val1
key4 column=cf1:col1, timestamp=2025-08-06T05:08:19.270, value=val1
key5 column=cf1:col1, timestamp=2025-08-06T11:07:48.855, value=val1
key6 column=cf1:col1, timestamp=2025-08-06T11:10:48.622, value=val1
6 row(s)
Took 0.0735 seconds
Unit test, integration test
TODO
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| Dead store to sleepMultiplier in org.apache.hadoop.hbase.replication.regionserver.SerialReplicationSourceWALReader.readWALEntries(WALEntryStream, WALEntryBatch) At SerialReplicationSourceWALReader.java:org.apache.hadoop.hbase.replication.regionserver.SerialReplicationSourceWALReader.readWALEntries(WALEntryStream, WALEntryBatch) At SerialReplicationSourceWALReader.java:[line 98] |
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|---|---|
| Docker | ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-7194/1/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile |
| GITHUB PR | https://github.com/apache/hbase/pull/7194 |
| Optional Tests | javac javadoc unit compile shadedjars |
| uname | Linux 25aaef6dc6f5 5.4.0-1103-aws #111~18.04.1-Ubuntu SMP Tue May 23 20:04:10 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux |
| Build tool | maven |
| Personality | dev-support/hbase-personality.sh |
| git revision | branch-2.6 / ae83e1e04c5ffc433b49b47d5f247a78d4d46111 |
| Default Java | Eclipse Adoptium-11.0.23+9 |
| Test Results | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-7194/1/testReport/ |
| Max. process+thread count | 4439 (vs. ulimit of 30000) |
| modules | C: hbase-server U: hbase-server |
| Console output | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-7194/1/console |
| versions | git=2.34.1 maven=3.9.8 |
| Powered by | Apache Yetus 0.15.0 https://yetus.apache.org |
This message was automatically generated.
Thanks for reporting and analyzing this problem.
We have a pending fix for serial replication in #7172 too, which needs to redefine the code flow, so we'd better land #7172 first and then back to this PR.
Will report back here after fixing #7172
Thanks.
:broken_heart: -1 overall
| Vote | Subsystem | Runtime | Logfile | Comment |
|---|---|---|---|---|
| +0 :ok: | reexec | 0m 0s | Docker mode activated. | |
| -1 :x: | patch | 0m 9s | https://github.com/apache/hbase/pull/7194 does not apply to branch-2.6. Rebase required? Wrong Branch? See https://yetus.apache.org/documentation/in-progress/precommit-patchnames for help. |
| Subsystem | Report/Notes |
|---|---|
| GITHUB PR | https://github.com/apache/hbase/pull/7194 |
| Console output | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-7194/2/console |
| versions | git=2.17.1 |
| Powered by | Apache Yetus 0.15.0 https://yetus.apache.org |
This message was automatically generated.
:broken_heart: -1 overall
| Vote | Subsystem | Runtime | Logfile | Comment |
|---|---|---|---|---|
| +0 :ok: | reexec | 0m 0s | Docker mode activated. | |
| -1 :x: | patch | 0m 9s | https://github.com/apache/hbase/pull/7194 does not apply to branch-2.6. Rebase required? Wrong Branch? See https://yetus.apache.org/documentation/in-progress/precommit-patchnames for help. |
| Subsystem | Report/Notes |
|---|---|
| GITHUB PR | https://github.com/apache/hbase/pull/7194 |
| Console output | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-7194/2/console |
| versions | git=2.17.1 |
| Powered by | Apache Yetus 0.15.0 https://yetus.apache.org |
This message was automatically generated.
:broken_heart: -1 overall
| Vote | Subsystem | Runtime | Logfile | Comment |
|---|---|---|---|---|
| +0 :ok: | reexec | 0m 0s | Docker mode activated. | |
| -1 :x: | patch | 0m 9s | https://github.com/apache/hbase/pull/7194 does not apply to branch-2.6. Rebase required? Wrong Branch? See https://yetus.apache.org/documentation/in-progress/precommit-patchnames for help. |
| Subsystem | Report/Notes |
|---|---|
| GITHUB PR | https://github.com/apache/hbase/pull/7194 |
| Console output | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-7194/2/console |
| versions | git=2.17.1 |
| Powered by | Apache Yetus 0.15.0 https://yetus.apache.org |
This message was automatically generated.
:broken_heart: -1 overall
| Vote | Subsystem | Runtime | Logfile | Comment |
|---|---|---|---|---|
| +0 :ok: | reexec | 0m 0s | Docker mode activated. | |
| -1 :x: | patch | 0m 9s | https://github.com/apache/hbase/pull/7194 does not apply to branch-2.6. Rebase required? Wrong Branch? See https://yetus.apache.org/documentation/in-progress/precommit-patchnames for help. |
| Subsystem | Report/Notes |
|---|---|
| GITHUB PR | https://github.com/apache/hbase/pull/7194 |
| Console output | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-7194/2/console |
| versions | git=2.17.1 |
| Powered by | Apache Yetus 0.15.0 https://yetus.apache.org |
This message was automatically generated.