Update the python deps caused by numpy 2.0

[liferoad]

Addresses https://github.com/apache/beam/issues/32681

Following https://cwiki.apache.org/confluence/display/BEAM/Python+Tips#PythonTips-HowtoupdatedependenciesthatareinstalledinPythoncontainerimages and https://cwiki.apache.org/confluence/display/BEAM/Python+Tips#PythonTips-InstallingPythoninterpreters, updated the base image deps.

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[liferoad]

cc @jrmccluskey

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[github-actions[bot]]

Reminder, please take a look at this pr: @damccorm

[liferoad]

We will pin protobuf==4.25.5 for now with Beam 2.61.0.

[liferoad]

cc @Abacn later I will polish this PR to update the deps. FYI.

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[liferoad]

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[tvalentyn]

Given how close we are to the release cut, I would keep the dependency changes to a minimum or do this update after the release cut.

[tvalentyn]

For example, if there is a regression in google-api-core==2.22.0, we have only two weeks to notice that.

[liferoad]

@damccorm what do you think? I am fine to do this after 2.61.0.

[damccorm]

Its borderline, but I probably agree waiting is safer. I don't think we need to do this for the current release

[liferoad]

Rebased. Based on the discussions, we should get this in ASAP after 2.61.0.

[liferoad]

https://github.com/apache/beam/actions/workflows/beam_PreCommit_Python_Coverage.yml, https://github.com/apache/beam/actions/workflows/beam_PreCommit_Python_ML.yml, are also read on the master. My PR is not related to these failed workflows.