Andreas Poehlmann
Andreas Poehlmann
Hi @cornhundred, currently not. You can use paquo to extract detections as geojson from a qupath project. But if you'd want to contribute, you could open a PR and I...
Hello @RhDm, thanks for reaching out ❤️ We're always happy to get new contributors on board! Could you explain your use case in a bit more detail, so that I...
Hi Dmitri, So as I understand, the information your code needs that would be specific to `QuPath` and `paquo` are: - the local path to the specific image - and...
Hi Dmitri, I checked my mail, and couldn't find your message. Maybe it got moved to spam and/or accidentally removed in the meantime. It's best to use the issue tracker...
Hello @hwarden162, Virtual memory is not a good proxy for real memory usage. Since paquo starts the JVM with a default setting of max ram usage of 50% of the...
Thanks for the traceback and the additional explanation! Looks like I am wrong and we really reserve 50% of RAM then. The good thing is you can easily override the...
Hmmm, just to be on the safe side: Are you running your script from the same working directory, that you used to test if `python -m paquo config --list` returns...
Thanks for checking. Something definitely seems to be off, considering your script requiring ~40gb and you still run out of memory on a 200gb machine. I'll try to create a...
Okay, So I can reproduce locally. And other than failing one test, we're hitting: https://github.com/jpype-project/jpype/issues/561
windows pytest output is now spam free: a5b5cb622ad0154b4429207bbc632704d352fcbd