Bastien Job

Hi ! I am having the same question (also trying to create a PoN for hg38 for higher resolution than the 500Kb / 1Mb provided with the software). I currently...

Hi, Same error here using a custom reduction object based on scBFA reduction metho (but this reduction object works with any other method or package i've tried till now)...

For each sample, all these info are actually exported in the corresponding sample subfolder. If you mean exporting an aggregation of such data in a single object / table for...

@kunstner : Better late than never, I'm currently writing it. It will probably be an independent package named 'EaCoNiC' (Easy Copy Number in Cohort). Actually, the aggregation step of L2R...

Hi ! Which version of EaCoN are-you using ? I tried to replicate your error with a public profile (GSM2538783 from GSE96708), but it worked well with the latest version...

Hi ! BSgenome changed its way to access some metadata. Up to now, it was just giving out a warning, it seems that now it has moved to an error....

Hi, thanks for testing EaCoN ! Building a wave package for an Affymetrix design is quite a process : it requires you to analyze normal samples (from public datasets found...

Hi Alessandro, Just a few words to tell you that I generated hg38 wave tracks for most used Affy designs (CytoScan HD, OncoScan / OncoScan_CNV, and snp6), I'll build and...

Hi Alessandro, OK, I lacked time (and will lack for the next 10 days) to properly insert the code modification to automatically handle the wave correction (ie, without specifiying a...

Errr... @apastore It appears that I did not have a backup of this 1.0.3 package before the shared storage was shut down X°( I'm digging into my hard drive backups...