Andrew O'Reilly-Nugent
Andrew O'Reilly-Nugent
Early progress for solving patches with arbitrary initial conditions. The included test shows how this has been added to `run_scm_collect` which may or may not the desired API design, but...
Possible naming discrepancy introduced in #330
Need to check that our spline doesn't go below zero, as identified in `K93` with high values of `k_I`. Reprex to follow.
Calculating `cohort.seed_survival_weighted` requires calculating the probability of patch survival at time t, normalised by the probability of patch survival at birth (i.e. the time a cohort was introduced to a...
The new approach to model inheritance (#267) requires some changes to the scaffolder. - [ ] Pass in an additional `Environment` template - e.g. `FF16r` uses the `FF16_Environment` - [...
Removed in #280 due to installation errors, but I'm not actually sure what it does. A mystery!
I was a little surprised to see the default Control parameters are overloaded when using `scm_base_parameters` [@L74](https://github.com/traitecoevo/plant/blob/develop/R/scm_support.R#L74) ```{r} expect_equal(scm_base_parameters("K93"), K93_Parameters()) Error: scm_base_parameters("K93") not equal to K93_Parameters(). Component “control”: Component “plant_assimilation_adaptive”:...
Implementing K93 I found a few functions that were called by other files (often `plant.h`) but not used. - [ ] net_mass_production_dt - [ ] establishment_probability - [ ] S_D;...
We implemented an FF16 variant with extrinsic drivers for growth and mortality. There was a minor hiccup in our change to `net_mass_production_dt` because this is called from `individual.h` and therefore...
Addresses #378.