aopisco

@Hoeze changing to dense() made a huge difference, thanks for the suggestion. regarding versions I'm using ``` import batchglm print(batchglm.__version__) v0.4.1+2.g63763e7 import diffxpy print(diffxpy.__version__) v0.4.2+49.g6f4ebc6 ``` now I changed to...

now I can't run nor wald nor lrt either simple or pair

This could generalize as a property of the annotations, e.g. right now colors are associated to each category, we could think about associate marker genes at each cell label

I would like to work on this

@ericmjl please release the issue back! thanks!

@galenxing can you revise this?

@chenlingantelope can you revise this?

I'm having exactly the same issue ` clang: error: unsupported option '-fopenmp' ` ` error: command 'gcc' failed with exit status 1 ` ` ---------------------------------------- ` ` Failed building wheel...

@bjstewart1 I'm using mnn through scanpy (https://scanpy.readthedocs.io/en/latest/api/scanpy.api.pp.mnn_correct.html) - have you tried that option?

@bjstewart1 I see what you mean... may I ask why you don't use the R version from Marioni's lab (in library scater)?