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Published 20 hours ago • verified publisher icon aomlomics

User-provided file path for reference database/classifier

Open lukenoaa opened this issue 1 year ago • 1 comments

Change from refseqs.qza/reftax.qza or classifier.qza to a user-provided file path (alt: Opal provides file path on server)

See how Opal handles this here: https://github.com/Geo-omics/GLAMR_omics_pipelines/blob/adc9f8ca09c68e1b7948669a5163fa40fb873551/Snakefile#L319

@ksilnoaa @CarterRoll @baydenwillms

lukenoaa avatar Apr 26 '24 15:04 lukenoaa

This has been implemented in Tourmaline V2. I'll close this issue once we migrate to that version.

ksilnoaa avatar Sep 13 '24 16:09 ksilnoaa