EBImage

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floodFill in place

7

Would it be possible to add a version of `floodFill` that performs the operation in place? I have images roughly 1500x1000 to 1800x1400 with hundreds of regions I want to...

AB-Kent

3D watershed

11

Hi @aoles I'd like watershed to work in 3D (on z-stacks). Right now I can run the function on a stack, but it seems to just perform watershed on each...

rorynolan

Official EBImage sticker

1

Create one at [Bioconductor/BiocStickers](https://github.com/Bioconductor/BiocStickers), consider using [GuangchuangYu/hexSticker](https://github.com/GuangchuangYu/hexSticker). Use the original package logo: 

aoles

TBD

aoles

Add sections to the vignette on: - image concatenation - histogram equalization: `equalize` and `clahe` - further reading: links to data packages demonstarating aplications of EBImage, e.g. [furrowSeg](http://bioconductor.org/packages/furrowSeg/)

aoles

As observed across BioC builders (at least malbec1 & malec2). ```r readImage(system.file('images', 'nuclei.tif', package='EBImage')) # Warning in readTIFF(x, all = all, ...): TIFFFetchNormalTag: ASCII value for # tag "JPEGTables" does...

aoles

I think it is often useful to be able to check that the image I am currently manipulating actually comes from the file I think it comes from. A quick...

lgatto

I have a problem : i am trying to deploy an app using EBImage on shinyapp.io and I have this error message : Error: Unhandled Exception: Child Task 726948673 failed:...

elodiegermani

question about reading the multiple channels tiff

1

I have a multiple channels tiff and the below is the info about this tiff === TIFF directory 0 === TIFF Directory at offset 0x8 (8) Image Width: 14066 Image...

dingxm

Package fftw3 was not found in the pkg-config search path.

1

I'm trying to deploy on Posit an app using this library, but I'm getting the error: Package fftw3 was not found in the pkg-config search path.

natyfp