Leo Lahti

Also some additional unit tests will be warranted here.

Not sure where the NAs come fromsince the assay itself does not seem to have any NAs: > sum(is.na(assay(tse, "relabundance"))) 0 Usually good strategy is to calculate manually what is...

This is a critical high-importance issue to sort out. I suggest that @TuomasBorman will prioritize to review this one with Jeba asap.

1. I agree that the default should be no agglomeration. Otherwise this can lead to confusing results. 2. Agreed. Note: The `mergeFeaturesByRank`has also the argument `onRankOnly` which limits agglomeration to...

Yet another observation. The order of rows is returned differently in `mergeFeatures` (Family2) and `mergeFeaturesByRank` (Family3), although the data is otherwise the same: Here, rownames do not match but the...

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Status of this @Daenarys8 ?

I like the idea of generic function if it can be reasonably implemented. It would be good to get this case closed soon in any case.

Ah right.. is there any way to deal with this automagically somehow..

Might be that "convert" is too generic name, reserved for other purposes?