Leo Lahti

icon indicating a website link http://www.iki.fi/Leo.Lahti icon indicating an email [email protected]

icon company Academic icon location Finland icon location Prof. in Data Science. Department of Computing, University of Turku, Finland. Complex natural and social systems.

Results 106 comments of Leo Lahti

Plot_composition function

Could we now start simplifying the function, and remove the extra options? I would rather keep the microbiome package simple core package. We can have further wrapper packages on top...

Features for temporal microbiota analysis

Definitely.

Features for temporal microbiota analysis

Excellent.

Improving aggregate_taxa labelling

Yes, that's good. PR welcome, or I can implement later.

Feature: please include support for multiple sorting variables to the plot_composition()

I agree this would be nice to have in principle. There is already an option to provide sample ordering manually via the sample.sort input argument, and finding the sorting in...

microbiomeSeq

Planning workshop will be held on June 4-6, 2018 in Glasgow.

Automatic conversion to vectors with one-sample table

Hi! Could you make a pull request on this, we can merge it to the package?

prevalence function

Hi! Have you tried to run this before the prevalence call: `library(microbiome)`

prevalence function

What do you mean that you do not get it from `library(microbiome)` (note the lowercase! it is not "Microbiome" but "microbiome")? If the package has been installed, then this command...

Error - Community divergence calculations

Which version of the microbiome package you are using?