HPAanalyze
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anhtr
A Bioconductor package to retrieve and analyze data from the Human Protein Atlas
Is it possible to download datasets only once and use your package with those local files?
HPA has recently provided RNA data for single cell types, blood and brain. These data are visualized on HPA website for each single genes. For example: https://www.proteinatlas.org/ENSG00000168757-TSPY2/celltype. I would like...
- [x] Update internal data to v23 - [x] Update download links to v23 - [x] Add 'stable' option for hpaDownload
- [x] hpaDownload use an internal table instead of hand coded dataframe - [x] allow for 'latest_stable' version - [ ] add a metadata df to the output to show...
Implement the search API so that user can find specific gene and column. Something along the line of: ``` hpaSearch(gene = 'TP53', columns = 'g,gs', exact = FALSE) ``` https://www.proteinatlas.org/about/help/dataaccess
Hey! I have tried a lot of things for `downloadList`, but any call of `hpaDownload` is failing, except when using example/build-in datasets. Any ideas? Thanks a lot! **example:** ``` >...
