Angelina John

Results 7 comments of Angelina John

I tried to do what you suggested but received these errors. I believe I had installed the packages correctly though. ![vizgen error biocparallel](https://github.com/satijalab/seurat/assets/124943595/7dce86db-6c47-4586-9b1a-b7877dd79baa)

Hm.. do you know how I would use the optimized LoadVizgen instead?

I was able to get that to work but I'm still getting the issue with the future library ![error cannot ffind HDF5 file](https://github.com/satijalab/seurat/assets/124943595/fe366a35-557a-4301-827b-b0ceda4c691e) Do you have any other suggestions for...

Yes I was able to make the object but it was unable to read the hdf5 files still.

It wasn't able to read any of the hdf5 files. This is my code: ``` library(Seurat) library(ggplot2) library(data.table) library(hdf5r) library(dplyr) library(BiocParallel) library(magrittr) library(progressr) library(sf) vizgen.obj

This is the full output after running ``` vizgen.obj >> using segmentations >>> adding metadata infos >>> adding FOV >>> all counts are > 0 Updating object: Validating object structure...

@FionaMoon were you able to solve your issue? I'm having the same problem and I'm also unsure how to fix it.