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Local Deepcell or Cellpose server for larger tile segmentation

Open jamesMo84 opened this issue 1 year ago • 2 comments

Hi, Great package, I've started applying the pipeline to TMA cores but am running into the issue with Deepcell Kiosk max tile size of 2048x2048. Is there scope to specify a local segmentation server (DeepCell or Cellpose) into ark.utils.deepcell_service_utils to overcome this tile size limit? how does one find and call the host name from alocal Deepcell server installed as per https://github.com/vanvalenlab/deepcell-tf

jamesMo84 avatar Aug 08 '23 03:08 jamesMo84