andraderenew

I don't understand what is to prepend the PATH but if it is to export to the variable PATH the route to msm I have done that and it doesn't...

I have done both and none seems to work. I have closed and opened terminal and restarted the mac also but nothing seems to change. Although that was before linking...

I have tried both. Believe me I don0t understand it. > On 28 Nov 2022, at 17:51, Erin W Dickie ***@***.***> wrote: > > > what command are you using...

> Hi, If I remember correctly from two years ago, there is a bug with the fsl installation package. I asked the fsl guys and they sent me a new...

sorry to ask here may be it's best if I open another thread. My question is how to use more than one cpu cores? Is there any flag to accelarate...

I have another error. ciftify_recon_all --surf-reg FS --fs-subjects-dir '/media/andraderenew/Elements/backup_1TB/image_databases/anorexia/results/Freesurfer/controls' --ciftify-work-dir '/media/andraderenew/Elements/backup_1TB/image_databases/anorexia/results/Diffusion/ciftify' s25634_T1MPRAGE_1mm_reconall --no-symlinks --n_cpus 8 cmd: mris_convert /media/andraderenew/Elements/backup_1TB/image_databases/anorexia/results/Freesurfer/controls/s25634_T1MPRAGE_1mm_reconall/surf/lh.pial /media/andraderenew/Elements/backup_1TB/image_databases/anorexia/results/Diffusion/ciftify/s25634_T1MPRAGE_1mm_reconall/T1w/Native/s25634_T1MPRAGE_1mm_reconall.L.pial.native.surf.gii Failed with returncode 255 error: No such file or directory error:...

I was surprised to verify I do have lh.pial.T1 but not lh.pial. So that must be the issue. Shall I restart recon-all? Is it a failed reconall? May be I...

I have read in freesurfer mail archive that perhaps lh.pial and lh.pialT1 are the same file? Any comments on this?

which version of Freesurfer am I supposed to be using? may be 7.3.2 isn't creating lh.pial but symbolic link from lh.pial to lh.pial.T1 as I am reading from freesurfer mail...