Arianna Miles-Jay

icon company MDHHS icon location Ann Arbor, MI icon location Manager, Bioinformatics & Genomic Epidemiology Unit at Michigan Department of Health & Human Services

Results 4 issues of Arianna Miles-Jay

Import dates option in Tempest?

6 comment

The Tempest paper states that you can load dates from a tab-delimited table, but I am not seeing and import dates option. I just downloaded v1.5.1 and tried the java...

specify order of output of -C option in help message

2 comment

Thanks for the new -C function for counting constant sites...super useful! Can I recommend explicitly stating that the output of -C is in A,C,G,T order in the help message? Some...

Reduce molten output to unique pairs

2 comment

Making a new request for the enhancement suggested in a previous comment (https://github.com/tseemann/snp-dists/issues/39#issuecomment-654909438) to make molten output only unique pairs of isolates.

Tracer v1.1.7 breaks when fontconfig is upgraded

I installed BEAST2 v2.5.0 via `conda`, which upgraded `fontconfig` from v2.12.1 to v2.13.1. After this, I tried to open Tracer v1.1.7, and it threw the following error: `java: symbol lookup...