Aman kumar singh

Thanks for you reply. I using --minimum-test-reads 1 because i think if I have some low coverage of reads than we don't want to miss those reads. I uses RNA...

here is the input file for your reference: contig position reference_kmer read_name strand event_index event_level_mean event_stdv event_length model_kmer model_ mean model_stdv standardized_level start_idx end_idx samples gene1 452 TTTAA 3a40d16c-e4fe-4e28-bc3c-7d31eabfdeb7 t...

1- run the preprocessing code on the test file: The test run was completely successful. No error occurs. I used the command: `nohup ./CHEUI -i /home/aclab/apps/CHEUI/test/nanopolish_output_test.txt -o /home/aclab/apps/CHEUI/scripts/preprocessing_CPP/test/out_C_signals+IDs.p/ -m /home/aclab/apps/CHEUI/kmer_models/model_kmer.csv...

Do you get the error message after some temp files are created or is it straight away? The temp file(51 in number) was made and also main output file(nanopolish_out_signals+IDS.p) has...

the number of lines in my nanopolish file: 254747835.

As you suggested I ran the the script with n=1 but it also not completed: 500000 processed lines 4000000 processed lines 4500000 processed lines 5000000 processed lines 5500000 processed lines...

I run the command in nohup. I don't think its the issue. Is my nanopolish file is too large for the command running.

Could you please take a moment to review the nanopolish out file I shared on May 4th? I'd appreciate it if you could identify any issues or problems. Thank you!...

when I run the CHEUI model 1 code in nohup command then when i open nohup file then it shows this message. I want to know my file is run...

please can you resolve this issue thanks in advance