levioSAM
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Lift-over alignments from variant-aware references
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levioSAM issues
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Hello, The documentation does not list the SA flag as lifted, and from reading the code I think that it is indeed not the case. Could you confirm this? Is...
I did two major change and one minor changes to help the usability of the library in external projects. - *Created a builder class for the `Lift` class.* (major) The...
Hello! Reading the documentation, it didn't seem like there was anything written about the use of phased vs. unphased VCFs. Is levioSAM capable of taking in unphased VCFs to perform...