stereoscope icon indicating copy to clipboard operation
stereoscope copied to clipboard

How to map all the cell type in a single visium slide

Open AkilaRanjith opened this issue 2 years ago • 0 comments

Hello All,

Thanks for the steroscope cool method!!! It lloks pretty good for my data.

I need some help to plot all my celltype in the spatial data and get single image. I used scatter plot but still another way to get nice plot plt.scatter(sl_adata.obsm["spatial"][:, 0], sl_adata.obsm["spatial"][:, 1], c=sl_adata.obsm["deconvolution"].values.argmax(1), cmap="Set2")

AkilaRanjith avatar Nov 07 '22 19:11 AkilaRanjith