her2st

her2st copied to clipboard

Hi, I want to read your dataset into a Seurat object. So, I copied the code in your script "Seurat_analysis_HER2_BC_samples.Rmd" and just changed the paths. When I run `InputFromTable` I...

martin284

Missing of G1_labeled_coordiantes.tsv

2

Dear Alma Andersson, Thanks for publicly sharing your precious data. The paper said that the pathologist annotates G1 section, but I could not find the corresponding G1_labeled_coordinates.tsv in the GitHub...

thelingxichen

Discrepancy between spot coordinate meta file and count matrix file

3

Dear Alma Andersson, First thank you for publicly sharing your precious data. I`m currently trying to analyze your BRCA HER2 results (zenodo 4751624) but I keep get errors in that...

sangwookbae

wrong passwd for data sets in her2st

3

Hi Alma, I found something wrong with the password [zNLXkYk3Q9znUseS] to decrypt the data provided in https://zenodo.org/record/4751624#.YjQkHy8RpaI (Spatial Deconvolution of HER2-positive Breast Tumors Reveals Novel Intercellular Relationships). Can you check...

eleozzr