vcfnp
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alimanfoo
Load numpy arrays and HDF5 files from VCF (variant call format)
Add INFO, FILTER and FORMAT field descriptions from the VCF header to the datasets as attributes (if possible).
Get's broken apart into -t c by argparse.
Log last variant position with progress.
The reason for this request is to enable possibly filtering and manipulation like you can do with PyVCF, but with a much faster (numpy + C++ backend) interface. I wrote...
