alienzj

Support gzip file

4

Hi, crAssphage man, Any plan to support gzip input ? https://lh3.github.io/2014/07/05/random-access-to-zlib-compressed-files Good tool, thanks ~

Run poetry install failed with the dependency error of pyyaml 5.4.1

1

**Describe the bug** Run `poetry install` failed when construct the development environment for MegaQC **To Reproduce** Steps to reproduce the behavior: 1. git clone https://github.com/ewels/MegaQC 2. cd MegaQC 3. poetry...

We plan to make a better documentation.

Extract then merge

9

When processing large-scale samples using `SemiBin multi` binning mode, `data_cov.csv` and `data_split_cov.csv` may require 1TB+ memory. This PR is dedicated to extracting sample-wise contigs coverage first and then merging, which...

spades: try to remove spades-bwa

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## Involved packages - spades ## Involved issue Close # https://github.com/BioArchLinux/Packages/commit/7f21e904bb65155d0e2d220f59c07d9970ab5049#commitcomment-143917186 ## Details - [x] Tested in the local machine (largest 16G RAM) and it is passed without any issue...

[Question]: How to install latest python packages ?

4

### Current Behavior ```nix {pkgs, ...}: { kernel.python.bioenv = { enable = true; python = "python311"; displayName = "Bioenv python"; extraPackages = ps: [ ps.pandas ps.numpy ps.seaborn ps.matplotlib ps.scipy ps.scikit-learn...