Aliaksei
Aliaksei
@joshmoore, I have the same issue with object arrays (copying hdf5 to zarr), however it even does not allow to do it with current zarr version. Could you tell me...
@clbarnes, thank you very much. Regarding 'r' mode: what could happen if store is not closed after reading? I am not introducing any modifications to it.
> zarr-python should work hard not to load the entire array, but will actively load the individual chunks. If you want to defer even that, you might want to look...
@cgohlke, are there any updates on this?
Dear all, Are there any updates on this functionality (getting size of subfolders and arrays recursively)? Thank you.
Dear all, Could you tell me please if it is currently possible to convert OME TIFF without pyramids to OME NGFF? Thank you for any input, Best regards, Aliaksei
> Hi @aliaksei-chareshneu - yes, certainly. Either with https://www.glencoesoftware.com/products/ngff-converter/ or the underlying https://github.com/glencoesoftware/bioformats2raw command-line tool. Both use Bio-Formats to read files, so they support all the formats that Bio-Formats supports....
Dear all, I would like to ask you if you could explain the meaning of channel properties in “omero” metadata (https://ngff.openmicroscopy.org/latest/#omero-md): specifically, “coefficient”,“family”, “inverted”, and “window”. Thank you for any...
> > there are just 2 unique segments: LaminB1 and Dapi, which correspond to 2 image channels? > > I'm unsure what you mean here with "segments" but otherwise, that...
@will-moore, thank you. Is labels always a single channel image, or just here? Also, how, based on NGFF content (this specific NGFF or any other NGFF), can you tell which...