Alexander Lenail

Is there a sort of graphic that is tedious to make with powerpoint to represent transformers (similar to all the lines in an FCNN)? Another important question is: is a...

Agreed -- I think there should be a python utility you download to your machine to parse your code -- it's out of scope for a web tool like NN-SVG....

In general, I've been trying to avoid adding support for network layouts that are best specified by code, because tensorboard model graphs already exists. The only diagrams I've seen of...

``` cellxgene launch https://github.com/chanzuckerberg/cellxgene/raw/main/example-dataset/pbmc3k.h5ad ``` does work though. Could it have to do with this warning? ``` [cellxgene] Warning: Var annotation 'index' has 32507 categories, this may be cumbersome or...

A little more digging: ``` DEBUG:server.app.app:Unknown color format type! Traceback (most recent call last): File "/Users/alex/miniconda3/envs/py39/lib/python3.9/site-packages/server/common/colors.py", line 187, in convert_color_to_hex_format raise ColorFormatException("Unknown color format type!") server.common.errors.ColorFormatException: Unknown color format type!...

Removing all my colors from `.uns` seems to have solved it. My colors were in the format: ``` 'majority_voting_colors': ['#b9342cff', '#873c46ff', '#996068ff', ... ``` They display properly when I make...

Oh that's interesting -- they're all hex rgb**A**...

yes, but I think there's still an issue with cellxgene, when it loads adatas written by modern versions of scanpy. When I set the palette in a scanpy UMAP, it...

scanpy==1.9.1, python 3.9.13, macOS 12.5.1

I ran scopen to impute my ATAC data using the scopen package directly, and it did not cause a memory error, so I think muon is maybe allocating more arrays...