NIfTI-Image-Converter

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nii2png going to work for .nii file to .jpg

3

can we convert .nii to .jpg slices using nii2png

ShibaPrasad

I need help with preprocessing medical image data. I have 100 nifti images. I want to extract 5 slices from each of these as jpegs. **However, I work in a...

slimyberry

scipy.misc.imsave is deprecated

7

According to [the scipy documentation](https://docs.scipy.org/doc/scipy-1.1.0/reference/generated/scipy.misc.imsave.html), the `scipy.misc.imsave` function is deprecated. More so, it has been completely removed in newer scipy 1.3+ versions, so that `nii2png` now fails: ``` python-console $...

rien333

Hello sir I am using repo and here I am getting stuck what is means and what is the proper solution of this error and furthermore please give me suggestion...

Aliktk

ModuleNotFoundError: No module named '_bz2'

3

I am using python 3.7 using the following packages in python virtual environment Package Version ---------- ------- nibabel 2.4.1 numpy 1.16.4 pip 19.1.1 scipy 1.3.0 setuptools 40.8.0 six 1.12.0 But,...

mikeitexpert

Normalizing image brightness implemented

2

I fixed a bug, that was caused by using `nibabel.load(inputfile).get_data()`. Instead `nibabel.load(inputfile).get_fdata()` should be used (`get_fdata()` instead of `get_data()`). Besides that, I implemented the normalization of the input image brightness....

dvnie1

how to convert multiple niftii files to PNG using nii2png in Matlab?

1

Hello , First of all thank you so much for this incredible work OK, so The nii2png. worked with me so well to convert nifti file to PNG images by...

ealyoubi

NIFTI images (MRI, DTI, and PET) from ADNI database to jpg

1

I have the dataset with four classes . I want to convert the NIFTI images to jpg to develop a model for classification I am still debugging this segments of...

dupfem

As discussed with OliJimbo on issue #6, I've changed the get_data() method for nib.NiftiImage objects to the new get_fdata(), which returns the np.ndarray.

vcasellesb

scipy.misc.imwrite and nibabel_get_data() have been deprecated. This commit uses imageio and numpy.asanyarray instead

OliJimbo